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2014
Caldeira, M. C., Ibáñez I., Nogueira C., Bugalho M. N., Lecomte X., Moreira A., et al. (2014).  Direct and indirect effects of tree canopy facilitation in the recruitment of Mediterranean oaks. Journal of Applied Ecology. n/a - n/a.
Dias, F. S., Bugalho M. N., Rodríguez-González P. M., Albuquerque A., & J. Cerdeira O. (2014).  Effects of forest certification on the ecological condition of Mediterranean streams. (Strecker, A., Ed.).Journal of Applied Ecology. n/a - n/a.
2013
de Oliveira, M. Isabel Fer, Lamy E., Bugalho M. N., Vaz M., Pinheiro C., d’Abreu M. Cancela, et al. (2013).  Assessing foraging strategies of herbivores in Mediterranean oak woodlands: a review of key issues and selected methodologies. Agroforestry Systems. 87(6), 1421 - 1437.
2012
Dias, F. S., Bugalho M. N., J. Cerdeira O., & M. Martins J. (2012).  Is forest certification targeting areas of high biodiversity in cork oak savannas?. Biodiversity and Conservation.
2011
Bugalho, M. N., Caldeira M. C., Pereira J. S., Aronson J., & Pausas J. G. (2011).  Mediterranean cork oak savannas require human use to sustain biodiversity and ecosystem services. Frontiers in Ecology and the Environment. 9(5), 278 - 286.
2003
Bugalho, M. N., & Milne J. a (2003).  The composition of the diet of red deer (Cervus elaphus) in a Mediterranean environment: a case of summer nutritional constraint?. Forest Ecology and Management. 181(1-2), 23 - 29.